If you invoice £120 for a £100 job, that extra £20 is not your income, it’s VAT you’re holding for HMRC. Treat it like payroll tax: ring-fence it the moment it lands. Spend it, and quarter-end turns into a scramble, often with interest from the day after it’s due and, if filing’s late, penalty points that trigger fixed fines.
Who this is for: UK SMEs (service firms with 5–30+ staff) and developers/contractors who run quarterly VAT and feel squeezed by timing differences, slow-paying clients, or Domestic Reverse Charge quirks.
Key Facts (save this box near the top)
- VAT deadline: You usually have 1 calendar month + 7 days after your VAT period ends to file and pay — and the payment must reach HMRC by then.
- Payment method speeds: Faster Payments / CHAPS = same/next day; Bacs = about 3 working days (so paying by Bacs on deadline day is late).
- Direct Debit nuance: Set up at least 3 working days before filing; if you file late, HMRC collects 3 days after you file. Plan bank headroom.
- Late-payment interest (since 6 Apr 2025): Bank of England base rate + 4% (repayment interest = base −1%, floor 0.5%). Check the live rate before modelling.
- Late submission penalties: Points system (from 1 Jan 2023). For quarterly filers, 4 points triggers £200, and each further late submission at the threshold is another £200.
- Scheme levers: Cash Accounting and Annual Accounting can smooth timing (typical entry threshold £1.35m, exit £1.6m VAT-taxable turnover).
VAT Is Not Your Money: The Golden Rule That Saves Cashflow
VAT you collect is a liability. When you “borrow” it for operating costs, you’re betting you can replace it before the deadline. Miss, and you’re financing the gap at HMRC’s late-payment interest, which tracks the base rate and, since 6 April 2025, is set at base + 4%.
Chain reaction if you dip into the VAT pot: shortfall at quarter-end → last-minute juggling → interest accrues from the day after the due date until paid → repeated lateness risks penalty points and £200 fixed penalties once you hit the threshold.
Prefer a system that prevents this? Bake VAT into your rolling model with our 52-week cashflow forecast template and Month-End 12™ checks: 52 week cashflow template and Month end 12 checklist.
The Deadlines That Trip Businesses Up
The “1 month + 7 days” rule: Filing and payment are due by the same date, and your money must clear HMRC’s account by then. “Sent” isn’t enough.
Bank method matters: Faster Payments/CHAPS are same/next day; Bacs takes around 3 working days. If you rely on Bacs, move earlier or switch method.
Direct Debit detail: Set DD up in advance; if you file late, HMRC collects 3 days after you file. Keep buffer cash for that lag.
The Real Cost of “Borrowing” the VAT
- Interest: Charged from the day after the due date, until full payment. The rate is base + 4% under current rules (check the live rate when you model).
- Late submission penalties (separate to interest): Points system; quarterly filers hit £200 at 4 points, then another £200 for each subsequent late submission while at threshold.
Worked example (illustrative):
Quarter VAT payable: £45,000. Pay 20 days late. Interest accrues daily from the day after the due date using the live HMRC late-payment rate (base + 4%). Use a small line in your 52-week cashflow forecast model to price lateness, it’s a great motivator.
Choose the Right VAT Scheme for Cashflow
Cash Accounting vs Standard VAT
With Cash Accounting, you pay output VAT when customers pay you and reclaim input VAT when you pay suppliers (eligibility typically ≤ £1.35m VAT-taxable turnover; leave at > £1.6m). Best where clients pay slower; less ideal if you’re often in refund.
Annual Accounting (smoothing) & instalments
One return per year, with instalments across the year and a balancing payment (or refund) after you submit. Great for predictability; not ideal if you frequently reclaim VAT because refunds are annual.
Payments on Account (big payers):
HMRC requires advance payments if you file quarterly and owe over £2.3m in any rolling 12-month period.
Not sure which suits your cash cycle? We’ll model both for your debtor/creditor profile. Book clarity call
Construction & Developers: Domestic Reverse Charge Changes Everything
Under the VAT Domestic Reverse Charge (DRC) for building and construction, many supplies are billed without VAT cash inflow, the customer accounts for VAT on their return. That removes the “VAT float,” so don’t plan working capital around VAT that won’t arrive.
If your software can’t show the reverse-charge VAT line, you must add wording (e.g., “Customer to account to HMRC for the reverse charge”) and make sure the customer can identify reverse-charge items.
- Deep dive: Reverse Charge VAT pitfalls → Reverse charge vat pitfalls
- Clarifier: CIS isn’t employment status → Cis not employment status
- Ops: CIS returns & statements in Xero/QuickBooks/Sage → cis returns in accounting software
Practical Controls That Keep You Out of Trouble
1) Ring-fence the VAT
Open a separate account and auto-sweep the estimated VAT from VATable receipts weekly. Reconcile to your return monthly.
2) Lock in the calendar
Create team tasks at T-10 / T-5 / T-2 business days. Remember DD collection can occur 3 days after you file (if filed late).
3) Forecast the liability
Give VAT its own line in your 52-week cashflow forecast. Stress-test T-60 / T-30 / T-7 days. Grab our template: 52-week cashflow template
4) Month-End 12™ VAT checks
Accrue output/input VAT, confirm any DRC exposure, review scheme eligibility, reconcile MTD submissions. Month end 12 checklist
If You Can’t Pay on Time (Act Early)
You may be able to set up a VAT payment plan online if you’ve missed the deadline, owe £100,000 or less, plan to clear it within 12 months, the debt is for a period starting in 2023 or later, you’ve filed all returns, and have no other HMRC plans/debts. Interest still accrues.
Want a sense-check before you call HMRC? We’ll map options and a realistic repayment outline with you. Book clarity call
Quick Scenarios (see yourself in the numbers)
- Agency waiting on client payments: Cash Accounting often eases timing, cash received → VAT due. Model against your payables profile.
- Developer under DRC: No VAT inflow on qualifying supplies; ring-fence early and forecast conservatively.
- Retail with seasonal spikes: Annual Accounting + instalments can smooth quarter-end shocks.
Want more clarity?
Build VAT discipline into your 52-week forecast
Download our 52-week rolling cashflow forecast (Heights-branded). It includes a VAT sweep line, VAT payment/refund timing, payroll/PAYE/NIC rows, and red-flag weeks, so quarter-end isn’t a shock.
→ 52 week cashflow forecast
